Browse Medical MCPs
Discover Model Context Protocol implementations for medical and bioinformatics applications.
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Showing 6 of 6 MCPs
STRINGmcp
A comprehensive Python package for interacting with the STRING database API through a Model Context Protocol (MCP) bridge. Enabling data retrieval as well as visualization
Variant Effect Prediction (VEPmcp)
VEPmcp is a Model Context Protocol server for the Ensembl Variant Effect Predictor (VEP) API [1]. It enables annotation and effect prediction of genetic variants, with full support for batch and single queries, and is designed for seamless integration with MCP-compatible clients (e.g., Claude Desktop, VS Code MCP extension). [1]: https://rest.ensembl.org/
PLSDBmcp
Model Context Protocol server for interacting with the PLSDB (Plasmid Database) API. This server provides tools to search, filter, and retrieve plasmid data from PLSDB.
EMBL-EBI Protein MCP Server
A Model Context Protocol (MCP) server providing access to the EMBL-EBI Protein database. This server enables LLMs and other MCP clients to search, retrieve, and analyze protein data from UniProt and related databases.
UCSC Cell Browser MCP Server
The UCSC Cell Browser MCP provides access to a comprehensive collection of single-cell RNA sequencing datasets. Here's what I found: Key Features Tested: Dataset Search - Can search by organism, body part, disease, project, or general query Dataset Details - Get specific information about individual datasets including sample counts Available Filters: 27 organisms (from human to various model organisms) 154 body parts (comprehensive anatomical coverage) 71 diseases (including COVID-19, Alzheimer's, various cancers) 26 major projects (HCA, Allen Brain Atlas, etc.)
GEOmcp
A Model Context Protocol (MCP) server for accessing GEO (Gene Expression Omnibus) data through NCBI E-Utils API. The tool will enable you to search for GEO datasets, series, samples, platforms, and profiles for your LLM. Tested with Claude Desktop, chatGPT has no out of the box support for this tool yet. Claude will automatically use the tools if it fits the context.