MCP directory
Find the right research tool.
Search trusted Model Context Protocol servers for bioinformatics, data access, and computational research.
5 MCPs
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breadcrumbsMCP
A Model Context Protocol (MCP) server that discovers and interacts with bioinformatics services through embedded "breadcrumb" metadata in HTML pages.
UCSCCBmcp
A Model Context Protocol (MCP) server that provides access to UCSC Cell Browser datasets by parsing the dataset.json file from https://cells.ucsc.edu/dataset.json.
STRING-MCP
A comprehensive Python package for interacting with the STRING database API through a Model Context Protocol (MCP) bridge.
PLSDBmcp
PLSDB MCP Server Model Context Protocol server for interacting with the PLSDB (Plasmid Database) API. This server provides tools to search, filter, and retrieve plasmid data from PLSDB.
Gene Expression Omnibus (GEO) MCP
A Model Context Protocol (MCP) server for accessing GEO (Gene Expression Omnibus) data through NCBI E-Utils API. The tool will enable you to search for GEO datasets, series, samples, platforms, and profiles for your LLM. Tested with Claude Desktop, chatGPT has no out of the box support for this tool yet. Claude will automatically use the tools if it fits the context.